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Multi-Platform NGS Compatibility: Adapters and Library Conversion

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Multi-Platform NGS Compatibility Across Major Sequencing Platform

The Shift Toward Multi-Platform NGS Environments

The NGS market has historically been centered around Illumina platforms, but in recent years a variety of new sequencing platforms have emerged and are increasingly being adopted. Because each platform has its own adapter structures and library requirements, the choice of library preparation kits can directly affect both data quality and operational efficiency.

To address these diverse environments, Celemics provides two types of solutions:

  1. Platform-specific adapter kits
  2. Library conversion kits

Two Approaches to Platform Compatibility

  1. Platform-specific Adapter Kits
    Celemics provides dedicated kits optimized for the requirements of the following sequencing platforms. These kits include platform-specific adapters, indexes, and blocker oligos.

    · Illumina
    · Thermo Fisher (Ion Torrent)
    · MGI
    · GeneMind

  2. Library Conversion Kits
    For the following platforms, Celemics offers kits that allow experiments to be performed using Illumina-based libraries, followed by a library conversion step for compatibility with each sequencing platform. The conversion is performed at the final stage after library preparation and target capture.

    · MGI (App-D sequencing)
    · Oxford Nanopore Technologies (ONT)
    · PacBio
    · Element Biosciences
    · Singular Genomics

Operational Strategy in Multi-Platform Environments

Each sequencing platform has its own advantages and limitations depending on its sequencing chemistry and operating principles. For this reason, many research environments operate multiple platforms depending on their analysis goals.

In such environments, selecting a kit provider with broad platform compatibility can significantly improve operational efficiency.

To achieve optimal performance on each platform, it is generally advantageous to use kits designed with the platform’s native adapter structure. This approach avoids additional PCR or conversion steps, thereby minimizing amplification bias and potential sample loss during purification.

On the other hand, for laboratories already familiar with Illumina-based workflows, using conversion kits can be an effective strategy when adopting additional sequencing platforms. Existing protocols can be maintained, which is particularly beneficial in laboratories using automated systems where workflow changes should be minimized.

In this approach, experiments are performed using the same Illumina-based workflow, and only the final conversion step is applied to adapt the library to the target sequencing platform. This also improves reagent standardization and inventory management. The diversification of sequencing platforms expands available options but also increases operational complexity. Celemics supports flexible multi-platform operation by providing both platform-specific adapter kits and library conversion kits.

Explore Real-World Library Conversion Workflows

See how library conversion strategies are applied across different sequencing platforms:

Need Help Designing Your Multi-Platform Workflow?

Choosing the right combination of sequencing platforms, adapters, and conversion strategies can significantly impact your workflow efficiency and data quality.

If you are considering a multi-platform setup or optimizing your current workflow, Celemics can help you design the right approach based on your research needs.

 

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