CancerMaster Panel

Comprehensive panel for somatic cancer and immuno-oncology markers

Overview

CancerMaster 패널

CancerMaster 패널은 유전자 내 발생하는 모든 유전 변이에 더하여 면역 치료 반응에 중요한 것으로 알려진 마커 (Immuno-oncology 마커)들을 정밀하게 분석할 수 있는 패널입니다. 특히 CNV 분석에서는 암세포 비율에 따라 다른 Cut-off를 적용한 분석을 진행하며 Epstein-Barr Virus (EBV) 및 Human Papillomaviruses (HPV) 분석 또한 진행 가능해 암 연관 유전자들의 종합적인 분석이 가능합니다.

CancerMaster
Features & Benefits

암 연관 유전자에 대한 포괄적인 정보 제공

CancerMaster는 다양한 종류의 암종에 연관된 유전자에 대한 종합적인 분석 결과를 제공하기 위해 개발된 패널입니다. Somatic variants는 물론 TMB, MSI 분석을 위한 Immuno-oncology 마커 및 EBV, HPV와 같은 암 연관 바이러스 분석까지 폭넓은 타겟 범위를 모두 커버할 수 있도록 설계되었습니다

ANALYSIS OF EBV & HPV

EBV (Epstein-Barr Virus)HPV (Human Papillomavirus)
- Related disease - Lymphoma
- Genes - EBV type1 (EBNA-2)
- Related disease - Cervical cancer
- Genes - HPV L1 gene
 (Analysis of a total of 24 types is possible)
Validation for detection of EBV type1 (EBNA - 2)
in control specimens
Analysis of the following 11 types of HPV types was completed using clinical specimens

임상 수준에서 검증된 패널 성능

암 연구는 패널 성능은 통한 일관된 결과를 제공할 수 있어야 함은 물론 재현성이 확보되어야 합니다. 셀레믹스의 CancerMaster 패널은 다양한 표준물질 및 일반적인 샘플은 물론 임상 수준의 검체에 대해서도 성능 평가를 완료한 패널입니다.

Variants of CacerMaster (764 Samples)

Variants of CancerMaster (764 Samples)

Variants of CacerMaster (764 Samples)

Specification

*Gene Add-On Service: Genes can be added by customer’s request.
Gene count*524 genes
Covered regionWhole CDS, Custom regions of oncogenes, immune response genes, and EBV & HPV viruses
Target size2.5 Mb
Mutation typeSNV, Indel, CNV, Rearrangement, TMB, MSI, EBV, HPV
Sample typeFFPE, Fresh frozen tissue (> 50 ng of fragmented DNA)
PlatformAll sequencers from Illumina, Thermo Fisher, MGI, PacBio, and Oxford Nanopore
Bioinformatics Support① Primary Analysis: FASTQ to annotated VCF
② Secondary Analysis: CNV, Large InDel, MSI, TMB
③ Tertiary Analysis: Clinical interpretation

Specification - Gene List

CancerMaster Panel

  • 524 genes | Gene count
  • 2.5 Mb | Target Size
  • Whole CDS, Custom regions of oncogenes, Immune response genes, and EBV & HPV viruses | Target Region
ABL1ABL2ACVR1ACVR1BADAM29ADGRA2AKT1AKT2AKT3ALKALOX12BALOX15BAMER1APCAPCDD1APEX1APOBAPOBEC1APOBEC3
A
APOBEC3
B
ARARAFARFRP1ARID1AARID1BARID2ASXL1ATMATP11BATRATRXAURKAAURKBAXIN1AXLB2MB3GAT1BACH1BAP1BARD1
BCL2BCL2A1BCL2L1BCL2L2BCL6BCL9BCORBCORL1BCRBIRC2BIRC3BLMBRAFBRCA1BRCA2BRD2BRD3BRD4BRIP1BTG1
BTKBTLACARD11CASP5CASP8CBFBCBLCCDC150CCDC168CCDC43CCL2CCL4CCND1CCND2CCND3CCNE1CD27CD274CD276CD28
CD3DCD3ECD3GCD4CD40CD44CD79ACD79BCD8ACDC42CDC73CDH1CDH2CDH20CDH5CDK12CDK4CDK6CDK8CDKN1A
CDKN1BCDKN2ACDKN2BCDKN2CCDX2CEBPACHD1CHD2CHD4CHEK1CHEK2CHUKCICCRBNCREBBPCRKLCRLF2CSF1RCSF2CSF2RA
CSF2RBCSNK2A1CTCFCTLA4CTNNA1CTNNB1CUL3CUL4ACUL4BCXCL10CXCL11CXCL9CXCR3CYLDCYP17A1DAXXDCUN1D1DDR2DICER1DIS3
DNMT1DNMT3ADOCK2DOT1LEGFRELMO1EML4EMSYEP300EPHA3EPHA5EPHA6EPHA7EPHB1EPHB4EPHB6ERBB2ERBB3ERBB4ERCC1
ERCC2ERGERRFI1ESR1ETV1ETV4ETV5ETV6EWSR1EYA2EZH2FAM46CFANCAFANCCFANCD2FANCEFANCFFANCGFANCIFANCL
FANCMFASFAT1FAT3FBXW7FGF1FGF10FGF12FGF14FGF19FGF2FGF23FGF3FGF4FGF6FGF7FGFR1FGFR2FGFR3FGFR4
FHFLCNFLT1FLT3FLT4FOXA1FOXL2FOXO3FOXP1FOXP3FRS2FUBP1GABRA6GAS6GATA1GATA2GATA3GATA4GATA6GID4
GLI1GNA11GNA13GNAQGNASGRIN2AGRM3GSK3BGUCY1A2GZMAGZMBGZMHH3F3AHGFHIST1H3BHLA-AHLA-BHLA-CHLA-DRAHLA-E
HLA-FHLA-GHNF1AHOXA3HRASHSD3B1HSP90AA1IDH1IDH2IDO1IDO2IFITM1IFITM3IFNA1IFNB1IFNGIGF1IGF1RIGF2IGF2R
IKBKEIKZF1IL12AIL12BIL2IL23AIL6IL7RINHBAINPP4BINSRIRF2IRF4IRS2ITGAEITKJAK1JAK2JAK3JUN
KAT6AKDM5AKDM5CKDM6AKDRKEAP1KELKITKLF4KLHL6KMT2AKMT2BKMT2CKNSTRNKRASLAG3LMO1LRP1BLRP6LTK
LYNLZTR1MAGI2MAGOHMAML1MAP2K1MAP2K2MAP2K4MAP3K1MAP3K13MAPK1MAXMCL1MDM2MDM4MED12MEF2BMEN1METMITF
MLH1MPLMRE11MSH2MSH6MTORMUTYHMYBMYCMYCLMYCNMYD88MYO18ANCOA3NCOR1NF1NF2NFE2L2NFKBIANKX2-1
NKX2-8NKX3-1NOTCH1NOTCH2NOTCH3NOTCH4NPM1NRASNSD1NSD3NTRK1NTRK2NTRK3NUP93NUTM1PAK3PAK5PALB2PARK2PARP1
PARP2PARP3PARP4PAX5PBRM1PDCD1PDCD1LG2PDGFRAPDGFRBPDK1PGRPHF6PHLPP2PIK3C2BPIK3C3PIK3CAPIK3CBPIK3CGPIK3R1PIK3R2
PKHD1PLCG1PLCG2PMS2PNPPNRC1POLD1POLEPPARGPPP2R1APRDM1PREX2PRF1PRKAR1APRKCIPRKDCPRPF40BPRSS8PTCH1PTCH2
PTENPTK2PTPN11PTPRCPTPRDQKIRAB35RAC1RAC2RAD17RAD50RAD51RAD51BRAD51CRAD51DRAD52RAD54LRAF1RANBP2RARA
RB1RBM10RELRETRHEBRHOARHOBRICTORRNF43ROBO1ROBO2ROS1RPA1RPS6KB1RPTORRUNX1RUNX1T1RUNX3SDHASDHB
SDHCSDHDSEMA3ASEMA3ESETSETBP1SETD2SF3A1SF3B1SH2B3SKP2SLIT2SMAD2SMAD3SMAD4SMARCA1SMARCA4SMARCB1SMARCD1SMO
SNCAIPSOCS1SOX10SOX2SOX9SPENSPOPSPTA1SRCSRSF1SRSF2SRSF7STAG2STAT3STAT4STK11SUFUSYKTACC3TAF1
TBX22TBX3TERCTERTTET2TGFBR2TIAF1TIGITTIPARPTMPRSS2TNFTNFAIP3TNFRSF14TNFRSF18TNFRSF4TNFSF13BTNKSTNKS2TOP1TOP2A
TP53TRAF7TRRAPTSC1TSC2TSHRU2AF1U2AF2USP9XVEGFAVHLVSIRVTCN1WISP3WNT1WT1WWP1XBP1XPO1XRCC3
ZBTB2ZNF217ZNF703ZRSR2

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셀레믹스에서 제공하는 BI 분석 서비스로 다양한 수준의 분석 결과 제공 가능

Resources

Technical Resources

[Product Overview] CancerMaster Panel

[Product Overview] Celemics Target Enrichment Panel Overview

[Catalogue] Celemics Products & Service Catalogue_All Products & Service

Safety Data Sheets

최신 MSDS 파일이 필요하시면 ‘Contact Us‘를 통해 문의 주시기 바랍니다.

MSDS_CancerMaster Panel_Illumina

MSDS_CancerMaster Panel_Thermo Fisher

MSDS_CancerMaster Panel_MGI

References

Molecular Cancer

Distant origin of glioblastoma recurrence: neural stem cells in the subventricular zone serve as a source of tumor reconstruction after primary resection

Li, X., Kim, H. J., Yoo, J., Lee, Y., Nam, C. H., Park, J., … & Lee, J. H. (2025). Distant origin of glioblastoma recurrence: neural stem cells in the subventricular zone serve as a source of tumor reconstruction after primary resection. Molecular Cancer, 24(1), 64.

 

10.1186/s12943-025-02273-2


View Detail >

Frontiers in Oncology

The clinical relevance of surgical specimens for RNA sequencing in lung cancer: a cohort study

Eom, J. S., Kim, S. H., Kim, K., Kim, A., Ahn, H. Y., Mok, J., … & Kim, M. H. (2024). The clinical relevance of surgical specimens for RNA sequencing in lung cancer: A cohort study. Frontiers in Oncology14, 1462519.

 

10.3389/fonc.2024.1462519


View Detail >

Cancer Research and Treatment

Varlitinib and Paclitaxel for EGFR/HER2 Co-Expressing Advanced Gastric Cancer: A Multicenter Phase Ib/II Study (K-MASTER-13)

Koo DH, Jung M, Kim YH, Jeung HC, Zang DY, Bae WK, Kim H, Kim HS, Lee CK, Kwon WS, Chung HC. Varlitinib and Paclitaxel for EGFR/HER2 Co-Expressing Advanced Gastric Cancer: a Multicenter Phase Ib/II Study (K-MASTER-13). Cancer Research and Treatment. 2024 Apr 29.

 

10.4143/crt.2023.1324


View Detail >

Summary | celemics publications


#Oncology


#ctDNA Sample


# AlphaLiquid® 100 Panel

Purpose

Varlitinib is a pan-human epidermal growth factor receptor (HER) inhibitor targeting epidermal growth factor receptor (EGFR), HER2, and HER4. We present a phase Ib/II study of a combination of varlitinib and weekly paclitaxel as a second-line treatment for patients with EGFR/HER2 co-expressing advanced gastric cancer (AGC).

Result

Genomic alteration landscape in circulating tumor DNA analysis according to the progression-free survival (PFS), overall survival (OS), and EGFR/HER2 immunohistochemical expression (n=15).


Conclusion

A combination of varlitinib and paclitaxel displayed manageable toxicity and modest antitumor activity in patients with EGFR/HER2 co-expressing AGC who progressed after first-line chemotherapy.

Method

The circulating tumor DNA (ctDNA) was extracted from the patient’s plasma (10 mL) at two time points (before treatment and at the first response evaluation or end of the treatment). The DNA NGS library and solution-based target enrichment were performed at IMBdx, Inc. (Seoul, Korea), using AlphaLiquid100. The captured DNA libraries were sequenced using the Illumina NovaSeq 6000 platform (Illumina, San Diego, CA) in the 2×150 bp paired-end mode.

Related Product

Circulating Tumor DNA Panel for 

Colorectal / Lung / Breast Cancer


View Detail >

The circulating tumor DNA (ctDNA) was extracted from the patient’s plasma (10 mL) at two time points (before treatment and at the first response evaluation or end of the treatment). The DNA NGS library and solution-based target enrichment were performed at IMBdx, Inc. (Seoul, Korea), using AlphaLiquid100. The captured DNA libraries were sequenced using the Illumina NovaSeq 6000 platform (Illumina, San Diego, CA) in the 2×150 bp paired-end mode.


liquid-biopsy

Colorectal Cancer
SensitivityFreq. 0.5%100%
Freq. 1.0%100%
Specificity97.9%


liquid-biopsy

Breast Cancer
SensitivityFreq. 0.5%94.4%
Freq. 1.0%100%
Specificity96.3%


liquid-biopsy

Lung Cancer
SensitivityFreq. 0.5%100%
Freq. 1.0%100%
Specificity100%




Image_blog-Thumbnail_Celemics Contact Us_image_link_Got Questions

Experimental & Molecular Medicine

Synergistic toxicity with copper contributes to NAT2-associated isoniazid toxicity

Yoon JG, Jang DG, Cho SG, Lee C, Noh SH, Seo SK, Yu JW, Chung HW, Han K, Kwon SS, Han DH. Synergistic toxicity with copper contributes to NAT2-associated isoniazid toxicity. Experimental & Molecular Medicine. 2024 Mar;56(3):570-82.

 

10.1038/s12276-024-01172-8


View Detail >